Applicability of the classical molecular dynamics method to study X-ray irradiated molecular systems

نویسندگان

  • Z Jurek
  • B Ziaja
  • R Santra
چکیده

Classical molecular dynamics (MD) has been successfully applied to model radiation-induced dynamics of highly ionized assemblies of atoms, including the dynamics of electrons, released during ionization processes. Here we test the applicability of a classical molecular dynamics scheme in a yet unexplored regime: for a strongly bound molecular system represented by buckminsterfullerene, C60, singly ionized by an X-ray pulse. We show MD simulation results obtained for electron and ion spectra, and compare them to existing experimental data from synchrotron experiments. We identify the sources of discrepancies between the classical simulations and experiments, and discuss possible improvements of the model. Our calculations establish limits for the applicability of classical MD simulations to X-ray irradiated systems. These classical simulations are much more computationally efficient than any rigorous quantum calculations, and are, therefore, often the only option. The conclusions obtained can be useful for planning computational studies of irradiated large molecular assemblies. PACS numbers: 31.15.xv; 61.48.-c; 33.60.+q Applicability of classical MD to X-ray irradiated molecular systems 2

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Acquiring molecular interference functions of X-ray coherent scattering for breast tissues by combination of simulation and experimental methods

Background: Recently, it has been indicated that X-ray coherent scatter from biological tissues can be used to access signature of tissue. Some scientists are interested in studying this effect to get early detection of breast cancer. Since experimental methods for optimization are time consuming and expensive, some scientists suggest using simulation. Monte Carlo (MC) codes are the best...

متن کامل

Molecular Dynamics Simulation of Water in Single WallCarbon Nanotube

The overall aim of this study is to calculate some water properties in the single wall carbon naotubes (SWCNT) and compare them to the bulk water properties to investigate the deviation of water properties inside the SWCNT from those in the bulk. Here some physical and transport properties of water molecules in the single wall carbon nanotube were reported by performing molecular dynamics (MD) ...

متن کامل

Determination of hemolysis, osmotic fragility and fluorescence anisotropy on irradiated red blood cells as a function of kV of medical diagnostic X-rays

Background: People occasionally undergo medical diagnostic X-ray examinations and expose their red blood cells to radiation. Radiation that is generated from medical diagnostic X-ray machines is widely used in medical diagnoses. One of the important parameters is kilo-voltage (kV) that is applied across the X-ray tube in medical diagnostic X-ray machines. Kilo-voltage influences the radiation d...

متن کامل

Influences of Small-Scale Effect and Boundary Conditions on the Free Vibration of Nano-Plates: A Molecular Dynamics Simulation

This paper addresses the influence of boundary conditions and small-scale effect on the free vibration of nano-plates using molecular dynamics (MD) and nonlocal elasticity theory. Based on the MD simulations, Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is used to obtain fundamental frequencies of single layered graphene sheets (SLGSs) which modeled in this paper as the mo...

متن کامل

Molecular Dynamics Investigation of The Elastic Constants and Moduli of Single Walled Carbon Nanotubes

Determination of the mechanical properties of carbon nanotubes is an essential step in their applications from macroscopic composites to nano-electro-mechanical systems. In this paper we report the results of a series of molecular dynamics simulations carried out to predict the elastic constants, i.e. the elements of the stiffness tensor, and the elastic moduli, namely the Young’s and shear mod...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2014